Greek Yogurt Peanut Butter Muffins with Chocolate Chips Recipe
If you’re searching for a muffin that perfectly balances wholesome goodness with a dose of chocolatey decadence, Greek Yogurt Peanut Butter Muffins with Chocolate Chips will absolutely win your heart (and your taste buds). Imagine fluffy, protein-packed muffins with a hint of tang from Greek yogurt, the cozy richness of peanut butter, and irresistible pockets of melty chocolate chips. These muffins are a dream for breakfast, snack time, or even dessert, and they’re so simple to make that you’ll want to bake them again and again!

Ingredients You’ll Need
Each ingredient in these Greek Yogurt Peanut Butter Muffins with Chocolate Chips has a purpose: some bring moisture, others add nuttiness or sweetness, and a few ensure that signature soft crumb. Here’s what you’ll need, plus a few tips for the best results:
- Plain Greek yogurt: Adds protein and keeps the muffins super moist while giving a subtle tangy flavor.
- Natural peanut butter: Brings a creamy, nutty base and pairs wonderfully with chocolate chips.
- Large eggs: Help bind the muffins and create a fluffy texture.
- Honey or maple syrup: Naturally sweetens the muffins without refined sugar; choose your favorite for a unique twist.
- Vanilla extract: Enhances all the other flavors with a warm, aromatic note.
- Baking soda: Works with the yogurt to help the muffins rise beautifully.
- Baking powder: Adds extra lift for a perfectly domed muffin top.
- Salt: Balances the sweetness and brings out the rich flavors.
- Oat flour (or blended oats): Makes the muffins gluten-free friendly and gives them a hearty, wholesome crumb.
- Rolled oats: Add a bit of chewiness and rustic texture, making every bite interesting.
- Mini chocolate chips: Lend chocolatey bursts throughout the muffins; add more on top for a bakery-style touch.
How to Make Greek Yogurt Peanut Butter Muffins with Chocolate Chips
Step 1: Prep Your Pan and Oven
Start by preheating your oven to 350°F. Line a 12-cup muffin tin with paper liners or give it a light greasing. This step ensures your Greek Yogurt Peanut Butter Muffins with Chocolate Chips pop out easily with perfect edges every time, and it makes cleanup a breeze.
Step 2: Mix the Wet Ingredients
In a large mixing bowl, whisk together the Greek yogurt, peanut butter, eggs, honey (or maple syrup), and vanilla extract until everything is smooth and creamy. This mixture will be thick and luscious, promising that every muffin will be moist and flavorful.
Step 3: Add the Leaveners and Salt
Sprinkle in the baking soda, baking powder, and salt. Stir until they’re well incorporated into the wet ingredients. These will help the muffins rise and balance out the flavors, so don’t skip them!
Step 4: Stir in the Dry Ingredients
Add the oat flour and rolled oats right into the bowl. Gently mix until just combined—no need to overdo it. Overmixing can make muffins tough, and we’re all about that tender, melt-in-your-mouth texture.
Step 5: Fold in the Chocolate Chips
Now for the magic: fold in the mini chocolate chips. This is where your Greek Yogurt Peanut Butter Muffins with Chocolate Chips start to look (and taste) like a real treat. Save a few chips to sprinkle on top if you want those bakery-style looks!
Step 6: Fill and Top the Muffin Cups
Divide the batter evenly among your prepared muffin cups, filling each about three-quarters of the way. If you’ve reserved extra chocolate chips, sprinkle them over the tops for a hint of chocolate in every bite.
Step 7: Bake to Perfection
Slide the muffin tin into the oven and bake for 18 to 22 minutes. You’ll know they’re ready when a toothpick inserted into the center of a muffin comes out clean or with just a few moist crumbs. Let them cool in the pan for 5 minutes, then transfer them to a wire rack to cool completely—if you can resist eating one warm!
How to Serve Greek Yogurt Peanut Butter Muffins with Chocolate Chips

Garnishes
For a touch of flair, try dusting the tops with a little powdered sugar or drizzling with warm peanut butter. A few extra mini chocolate chips or a sprinkle of rolled oats before baking make these muffins look irresistible and add a hint of crunch.
Side Dishes
Pair your Greek Yogurt Peanut Butter Muffins with Chocolate Chips with a bowl of fresh berries or a smoothie for a balanced breakfast. For a more indulgent snack, enjoy them alongside your favorite coffee or a tall glass of cold milk.
Creative Ways to Present
Stack these muffins on a pretty cake stand or tuck them into a lined basket for a brunch spread. For grab-and-go mornings, wrap each muffin in parchment or pop them into reusable snack bags. You could even slice them and spread with a little extra peanut butter or Greek yogurt on top for a protein-rich treat.
Make Ahead and Storage
Storing Leftovers
Once your muffins have cooled completely, store them in an airtight container at room temperature for up to three days. If your kitchen runs warm or you want them to last longer, pop them in the fridge, where they’ll stay fresh for up to a week.
Freezing
Greek Yogurt Peanut Butter Muffins with Chocolate Chips freeze beautifully! Place cooled muffins in a single layer on a baking sheet, freeze until solid, then transfer to a freezer-safe bag or container. They’ll keep well for up to three months—just thaw at room temperature or warm in the microwave for a quick treat.
Reheating
If you love a warm muffin, simply pop one in the microwave for about 20 seconds or gently reheat in a low oven. This brings back that just-baked aroma and makes the chocolate chips perfectly melty again.
FAQs
Can I use regular yogurt instead of Greek yogurt?
Greek yogurt is thicker and adds more protein, but you can use regular yogurt in a pinch. Just know the batter will be a bit looser, and the muffins may be slightly softer.
Is there a substitute for peanut butter?
Absolutely! Try almond butter or sunflower seed butter for a different flavor profile or to accommodate nut allergies. Each will give the muffins a unique twist.
Are these muffins gluten-free?
If you use certified gluten-free oat flour and rolled oats, these Greek Yogurt Peanut Butter Muffins with Chocolate Chips are completely gluten-free. Always check your labels if gluten is a concern.
Can I make these vegan?
While the eggs and Greek yogurt are key for texture and protein, you can experiment with plant-based yogurt and flax eggs. The texture may change slightly, but they’ll still be delicious!
What’s the best way to make oat flour at home?
Just blend rolled oats in a food processor or high-speed blender until they reach a fine, flour-like texture. It’s quick, easy, and works perfectly in this recipe.
Final Thoughts
I hope you feel inspired to whip up a batch of Greek Yogurt Peanut Butter Muffins with Chocolate Chips soon—they’re truly a must-try for muffin lovers and anyone craving a wholesome, satisfying treat. Don’t be surprised if they disappear fast; they’re just that good! Happy baking, and don’t forget to share your creations with friends and family.
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Greek Yogurt Peanut Butter Muffins with Chocolate Chips Recipe
- Total Time: 30 minutes
- Yield: 12 muffins 1x
- Diet: Vegetarian
Description
These Greek Yogurt Peanut Butter Muffins with Chocolate Chips are a healthy and delicious treat combining creamy Greek yogurt, natural peanut butter, and rich chocolate chips. Perfect for breakfast or a snack, they are high in protein, gluten-free when using certified oat flour, and naturally sweetened with honey or maple syrup.
Ingredients
Wet Ingredients
- 1 cup plain Greek yogurt
- 2/3 cup natural peanut butter
- 2 large eggs
- 1/3 cup honey or maple syrup
- 1 teaspoon vanilla extract
Dry Ingredients
- 1/2 teaspoon baking soda
- 1 teaspoon baking powder
- 1/4 teaspoon salt
- 1 cup oat flour (or blended oats)
- 1/4 cup rolled oats
Add-ins
- 1/2 cup mini chocolate chips (plus more for topping, optional)
Instructions
- Preheat Oven and Prepare Pan: Preheat the oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners or lightly grease it to prevent sticking.
- Mix Wet Ingredients: In a large bowl, whisk together the Greek yogurt, natural peanut butter, eggs, honey (or maple syrup), and vanilla extract until the mixture is smooth and well combined.
- Add Leavening Agents and Salt: Stir in the baking soda, baking powder, and salt to the wet mixture to prepare the batter for rising and flavor balance.
- Incorporate Dry Ingredients: Add the oat flour and rolled oats to the mixture, gently mixing until just combined. Avoid overmixing to maintain muffin tenderness.
- Fold in Chocolate Chips: Carefully fold in the mini chocolate chips, reserving some for topping if desired.
- Fill Muffin Cups: Divide the batter evenly among the muffin cups, filling each about three-quarters full. Sprinkle additional chocolate chips on top if preferred.
- Bake: Bake the muffins in the preheated oven for 18 to 22 minutes, or until a toothpick inserted into the center comes out clean.
- Cool Muffins: Allow the muffins to cool in the pan for 5 minutes, then transfer them to a wire rack to cool completely before serving.
Notes
- Use flavored Greek yogurt for added sweetness or to vary the flavor profile of the muffins.
- To make this recipe gluten-free, ensure the oats and oat flour are certified gluten-free.
- These muffins freeze well and are perfect for a quick grab-and-go breakfast or healthy snack.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 185
- Sugar: 8g
- Sodium: 160mg
- Fat: 9g
- Saturated Fat: 2g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 2g
- Protein: 7g
- Cholesterol: 30mg